These rare gene defects with strong effect on phenotype are likely to be helpful in illuminating the biological pathways involved in individuals developing those phenotypes, if the individuals are studied thoughtfully in clinical studies and especially if genetic engineering in an animal model can replicate the effect. But many of the diseases and disorders that you and I most care about will not be understood through this kind of research, because those diseases and disorders are already known to be polygenic (influenced by many genes, each of small effect) and multifactorial (subject to influence both from genes and from various environmental factors, some of which are very poorly understood). Identical (monozygotic) twins differ for many traits of interest, showing that influences other than genetic influences still make a difference in human development.
They were lucky, apparently their parents (both he and his brother are pain-insensitive) were highly aware of the risks, observant and diligent, and drilled them on safety especially with respect to infections.
The article notes that Steven Pete's congenital analgesia was discovered after his parents found him "chewing on [his] tongue" which I assume is to be interpreted more or less literally (though at 4 months old hopefully without much damage)
"Genentech is collaborating with Silicon Valley startup 23andMe, which has sold its $99 DNA spit kits to 1 million consumers who want to find out more about their health and family history—more than 80 percent have agreed to have their data used for research"