Specifically, they made conversations almost impossible to have by making top posting of replies the default, coercing the user into a behavior model that was contrary to the best practices that had been established by users of email to that point. The predictable result of this is that people stopped bottom posting and conversation threads were made practically impossible.
I wouldn't be surprised if this is why forums took over from mailing lists. I also wouldn't be surprised if this is why Gmail became so popular, because it fixed a problem that should never have existed: it made conversations comprehensible again.
So while I wouldn't blame newbies for breaking email, there is definitely a strong correlation, and it's because of the inadequate tools they were provided with in those early days.