I would actually prefer to have numpy included before those statistics functions.
GAE just avoids it alltogether (except locally, where you have CPython and use it to stub out core services hosted on the cloud runtime). You simply can't import sqlite3 on GAE when running on cloud runtime, nor can you really use it as an external dependency.
I'm not really up on the details, but the PyPy website claims they've gotten around this by implementing a pure Python equivalent of the CPython stdlib library (http://pypy.org/compat.html).
I would put forward that SQLite3 is probably a pretty easy include in most C projects compared to whatever numpy would likely require. That said, I'm not qualified to assess this, being neither a numpy, Python core, or sqlite3 dev.
All of this aside, it's worth mentioning that the entire standard lib includes and depends on some other C-only libraries. So it's not unprecedented. In principle, you'd want the standard lib to have as much pure Python as possible (PyPy kind of takes this to the ultimate extreme from what I can gather), but this isn't always practical (great example of "practicality beats purity" if you ask me).
Speaking of which, if it's cool to have `sqlite3` in the standard lib as part of the included batteries, why not mean and variance and the like? :D
I have never used numpy on GAE, but I would suspect some of it is not enabled for those reasons.