Mitochondria raise flags because of people like the UK Dr Ruth Myhill. She claims to be a researcher on chronic fatigue syndrome. CFS is real, but sadly is an area rife with cranks. Myhill appears to have a lot of crank-like beliefs. Her "research" is hopeless, and amounts to unlicensed unethical experimentation on desperate people.
I guess, although I have no supporting evidence, that the word mitochondria is used more often by cranks than other organelles.