Citizenship is not the equivalent of an American green card. In Japan, that would be Permanent Residency (永住権).
A person with no Japanese ancestry becoming a citizen is exceedingly rare. It does happen, but not very often, and the process is onerous.
Applying for PR is more common, but still a burdensome procedure and is ostensibly only granted to those who either have a direct connection to Japanese family, either through ancestry or marriage (especially marriage resulting in procreation), or who have achieved some kind of major conventionally recognized accomplishment (e.g., winning the Nobel Prize):
http://www.moj.go.jp/content/000096661.pdf