Ditto the Canadian Charter of Rights and Freedoms, with its 'notwithstanding' clause. (Though they're presently litigating over that, so we'll see what happens!)
Any constitution or human rights instrument full of exemptions, 'emergency powers', 'notwithstanding' clauses, or 'states of exception' is not worth the paper it's written on.
(That’s not to say laws shouldn’t make a better attempt to circumscribe exceptions)
No laws are absolute, some laws are more holes than cheese, but a law that says "A government must not punish you for doing X, except in accordance with duly passed criminal laws that make X illegal" is almost entirely pointless. It exists solely to make people feel fuzzy when reading the first half of the sentence, which is the only part you'll ever hear quoted, while not actually impeding anything a government may wish to do to you. This is intentional. Those carte blanche exemptions do not consistently appear across international human rights treaties by some accident.
Think about all the laws that aren't even attempted because they would be struck down. Or all the laws floated, but which don't pass because they'd be struck down. Or the laws modified so they won't be struck down.
I'm with you though - I think a lot of the constitution protections in the US have been watered down over the decades.
Last but not least, a number of EU countries enshrine https://en.wikipedia.org/wiki/Secrecy_of_correspondence in their constitution.
Also it isn't respected in most types of criminal trials. If a sealed physical letter is opened and proves fraud, for example ...
Unfortunately large majority of parties in Finnish Parliament do not really care about that provision and have passed multiple laws which create exceptions to it. They do it via the proper protocol (which is essentially the same as modifying the Constitution itself) so it's technically legal.
But end to end encryption with forward secrecy at no cost to user makes your right to private communication absolute. It's a new thing and the balancers can't balance it against other rights of other people, so this happens.
Anyway, as far as human/fundamental rights go, the encryption and related issues in Chat Control tend to fall more on the Article 7 side of the Charter[2] like many similar questions related to different forms of (mass) surveillance, secrecy / confidentiality of (electronic) communications, including related national regimes with often diverse jurisdiction-specific histories, etc.
[1] The main difference between a Directive and a Regulation under EU law is that a Directive requires implementation on the national level to work properly (ie national legislation, usually with some room for discretion and details here and there), while a Regulation is directly binding and effective law in member states wholly in itself.
[2] And similar/corresponding language in the European Convention on Human Rights (ECHR), including the related case law of the European Court of Human Rights (ECtHR). While these are not EU institutions, European human rights law is recognized and applied as constitutional / fundamental rights-level law both by the EU and member state courts.