* For a clean architecture you want to isolate each Mongo and node process in its own system. So you need 6 instances, not 3.
* You'll need load-balancers in front of these node instances. That costs extra on AWS, and is included on dotCloud.
* Did you include the cost of bandwidth and disk IO in your estimate? Those are extra on AWS, but included on dotCloud.
* Monitoring is extra on AWS. It's included on dotCloud.
* I love to have a sandbox version of my entire stack, with the exact same setup but separate from production. That's an extra 2 instances on AWS (+io +bandwidth +load-balancing +monitoring). It's free on dotCloud, and I can create unlimited numbers of sandboxes which is killer for team development: 1 sandbox per developer!
* We only charge for ram usable by your application and database. AWS charges for server memory - including the overhead of the system and the various daemons you'll need to run.
* For small apps specifically, you can allocate memory in much smaller increments on dotCloud, which means you can start at a lower price-point: the smallest increment is 32MB.
I didn't even get into the real value-add of dotCloud: all the work you won't have to do, including security upgrades, centralized log collection, waking up at 4am to check on broken EBS volumes, dealing with AWS support (which is truly the most horrible support in the World, and we pay them a lot of money).
+ Our support team is awesome and might even fix a bug in your own code if you're lucky :)