I wouldn't claim that I am bad at writing (at least in my native language, which is not English) - at least many colleagues say so. But I do insist that when writing I don't think that way. If I were to answer these question, my honest answers would be:
"why did they organize the essay in this way": I just wrote down the thoughts that came to my mind, and then gave them some structure that seemed right.
"what was their motivation for focusing on X": Either "because it felt right" or "I had to write at most x pages, and indeed it would have made sense to focus on more topics, so I focused on this arbitrary thing"
So indeed I would claim that a lot of sensible reasons why things are this way actually are post-hoc rationalizations. :-)