They did but if you go through the actual studies, the incidence of myocarditis was low, and almost all cases were non-serious, with no measured long-term impacts.
Further, the studies on long COVID incidence in vaccinated vs unvaccinated people suggested that the rates in vaccinated individuals were lower, though iirc it was only by something like a third or half. (among people who were symptomatic, at least, the total protective effect was likely greater)