That works because each plane is (nearly) exactly the same as the one before it and we have exact specifications for the plane.
You can do maintenance, inspections, and replacement because of those specifications.
In software the equivalent of blueprints is code. The room for variation outside software “specifications” is infinite.
Human reliability when comes to assembling planes is also much higher than 99%, and LLM reliability creating code is much, much lower than 99%.