Agreed. However, taking into account the full statement (provided by the collective U.S. Intelligence Services) to include the parts about: Khamenei has not reauthorized the nuclear weapons program he suspended in 2003 and that he has final say in the matter, says they were not working actively towards a bomb.
But there was growing advocation for doing so. Now they have been emboldened further and been given fuel to advocate restarting the program. If Khamenei had so far kept the pro-nuke elements of the regime at bay, this strike may force the very thing that foreign Intelligence roped us into "stopping".
I am not saying they did not have the means; they will rebuild the means, and now they will have the motivation as well as know-how in a way that will be more difficult to stop.