(commenting from my high-karma account, to avoid the green-user stigma)
I see no good reason to incentivize intelligent thoughtful
conversation, no one actually does it for karma.
I comment to grind karma points. There's a fairly linear relationship between comment length and score, my best comments (
https://news.ycombinator.com/item?id=3705599 https://news.ycombinator.com/item?id=3218642) are essentially small blog posts, requiring research, links, several drafts and extensive revision. If it wasn't for karma, I wouldn't go to the effort.