In a vacuum I don't love the changes he made to Part 2 but I can also see how they will make it flow much better into Part 3 than Dune > Dune Messiah ever did (that always felt disjointed to me); as well as make that story more compelling.
I've read Dune at least a dozen times and followed up with Dune Messiah a few times. Sometimes I get that feeling of disjointedness. At its most extreme, Paul feels like a total stranger. (Stilgar might as well be a different characters; we see a changed character, but not the change.) Sometimes it feels like the books flows nicely despite the time jump. My best guess is that it depends on what aspects I've been most focused on while reading.
I'm reserving judgment as well, but one part is really stuck in my craw. Although I felt like Villeneuve's Chani was generally stronger I felt the last scene made her look like a child and my first thought was that it was a weak attempt to set up a particular relationship for Part 3.
Lynch could have made a Dune Messiah. Villeneuve is not able to express the mysticism.
Not really. The biggest issue is time. As far as i noticed, one needs 2 hours of movie for 100 pages of a book. Anything below this (fitting 400 pages in 2 hours) is art. That's why Lynch's version is better.
For example, 2001 was a great movie but Clarke's worst book imo because he collaborated with Kubrick to write it for for big screen.
https://en.wikipedia.org/wiki/Alan_Smithee
"Alan Smithee (also Allen Smithee) is an official pseudonym used by film directors who wish to disown a project."