He says that true sentences in second order logic aren't computably enumerable, he's not talking about the axioms.
> Don’t know if computably enumerable is the same as recursively enumerable
I've only ever seen them used as synonyms.
> Collect all true statements in this model of PA_2. Call that Super PA. That’s now my axiomatic system. I now have an axiomatic system that proves all true statements of arithmetic. Surely this set of axioms is not recursively enumerable.
What you call "Super PA" is called "the theory of PA". Its axioms are indeed not computably enumerable. That doesn't mean that the axioms of PA themselves aren't computably enumerable. And this much is true both for first and second order logic.
(edit: in fact, the set of Peano axioms isn't just computably enumerable, it's decidable - otherwise, it would be impossible to decide whether a proof is valid. This is at least true for FOL, but I do think it's also valid for SOL)
