Lisp is a language family, not one specific language. Do you have a particular one in mind? There are many languages that can be called Lisp which are different from each other, and some have multiple implementations.

Mainstream Lisp dialects have had objects other than lists for many, many decades. The LISP-1 programmer's manual from 1960, referencing the original language which started it all, describes zero-based arrays already.

In some Lisp-like languages, the syntax processing itself is based on arrays, like Janet. The parenthesized notation turns into a nested array, not a nested linked list.

In Lisps where the syntax is based on lists, that doesn't imply that your program has to work with list at run-time. The code-transformations (macros) which happen at compile time will be working with linked lists.

Budding computer scientists and engineers like to write toy Lisp dialects (sometimes in one weekend). Often, those languages only work with linked lists, and are interpreted, meaning that the linked lists representing the code structure are traversed to execute the program, and repeatedly traversed in the case of loops.

(If you're making remarks about an important historic language family based on familiarity with someone's toy Lisp project on github, or even some dialect with an immature implementation, that is a gross intellectual mistake. You wouldn't do that, would you?)

Linked lists may "kind of suck" on cached hardware with prefetch, but that doesn't prevent them from being widely used in kernels, system libraries, utilities, language run-times (internally, even in the run-times of languages not known for exposing linked lists to the programmer), ... C programmers use linked lists like they are going out of style.