Now I admit ChaPoly has some pretty nice advantages if you're implementing it in software. But with the trend of AES-GCM hardware support and the long-lived nature of WireGuard's crypto choices given the lack of ciphersuite negotiation (which I agree was a good decision!), I'm not sure AES-GCM wouldn't have been the best (albeit less cool) choice.
Although maybe on the other hand, ChaPoly can still be made to run pretty fast even just in software and it gives WireGuard the advantage of being more practical on very low-end devices that might lack AES-GCM hardware. Avoiding ciphersuite negotiation means a tradeoff needs to be made somewhere, at least with current algorithms, and I'd bet line-rate hardware encryption is probably the least likely place to see WireGuard for a while at least, so maybe WireGuard did make the best tradeoff at the time.