Note that you don't have to leave the key "lying around" as you can secure it the same way you would an asymmetric key. And it certainly beats leaving the plaintext secrets themselves lying around in a .env file or similar.
EDIT:
I see you were saying "dev machine" exposes "prod secrets" but that's not the case. The protocol is designed so you would have secrets.json and secrets.prod.json, encrypted with different keys and (necessarily) managed separately but with the same tools and api. Dev machines being compromised compromises dev keys, not prod keys.
Read the last section in the README on GitHub for more on the dev/prod split.