The problem statement is: find a mapping from the surface of a sphere to ℝ² that minimizes a particular penalty function. This paper maps each hemisphere to ℝ², and then argues that the normal boundary penalty term can be ignored.
However, if you just look at what the map does to South America and Africa, where there's a massive discontinuity at the equator, it's absurd to argue that the boundary penalty should be ignored. This map is useless for equatorial regions, and the penalty function should reflect that.