Here are the LaTeX versions from the article source:
\begin{align}
\begin{split}
\mathcal{C}(M) = &\: \Et^t(\theta,\S_t)^2
+ C_t M_t^{-\frac{2}{d}}
+ \Et^\pde(\theta,\S_\inte)^2 +C_\pde
M_\mathrm{int}^{-\frac{2}{d+1}}\\&+ C_1{T}^{\frac{1}{2}}
\bigg[\Et^\divv(\theta,\S_\inte) +C_\divv
M_\mathrm{int}^{-\frac{1}{d+1}}+(1+\nu)
big( \Et^s(\theta,\S_s) + C_s M_s^{-\frac{1}{d}}\big)\bigg],\\
\end{split}
\end{align}
and for 3.12:
\begin{align}
\begin{split}
\norm{(u_0)_j-\hu_j(t=0)}_{L^2(\mathbb{T}^d)} &\leq
\norm{u_j-\hu_j}_{L^2(\partial \Omega)} \\&\leq
\sqrt{\frac{2\max\left\{2h_\Omega,d+1\right\}}
{\rho_\Omega}}\norm{u_j-\hu_j}_{H^1(\Omega)}\\
&\leq \sqrt{\frac{2\max\left\{2h_\Omega,d+1\right\}}
{\rho_\Omega}}C_{1,k,d+1, u_1} \lambda_{1}(N)N^{-k+1},
\end{split}
\end{align}
Note that these rely on user-defined commands \Et, \pde, \inte, \divv, \S, \hu, for example \renewcommand{\S}{\mathcal{S}} and \newcommand{\Et}{\mathcal{E}_T}.