What does this claim even mean? I don't think that anybody thinks including Apache code in their GPL project would retroactively relicense the code of the Apache-licensed project that they probably had nothing to do with, written by someone they may have ever met. Is this what you're confirming?
> The aggregate work itself would also have very little copyright protection, even if you AGPLv3 it.
> The only copyright you newly get in the aggregate work is selection, arrangement, etc.
That's not really how code works. The old code is mixed with the new code, and the combination (I've always thought) is going to have all of the restrictions of both (all) licenses involved.
If I take a public domain book containing un-trademarked characters, write 20 additional chapters for it, and do a 20% rewrite on the original chapters, are you saying that my book wouldn't be copyrightable? Sounds like the GPL.