Another thing is the way Magnet moves and resizes windows seems to create less visual 'flashing' than Rectangle's method, for instance Rectangle will resize, then move, then resize again when maximizing a window, which can create a really pronounced 'flashing' effect. That's not to say Magnet has no 'flashing' ever, there's certain situations where it does and to my understanding it seems necessary due to the limited nature of moving and resizing windows on macOS (I guess you have to do one then the other and can't both move and resize simultaneously?), but to me Magnet's methods often look visually better.
Rectangle is great though, I've switched to it from Magnet and these are just some minor gripes.
Personally, I wish Rectangle had the option of storing configuration in a simple dot file in my home dir but I understand that would prevent syncing through icloud, which is a feature I imagine a lot of folks like. Barring that, I wish rectangle could export/import the configuration in a more editor friendly way so I could make these configuration changes much faster and more easily ensure consistency across settings.
The main thing missing for me is being able to use mouse buttons to move windows: I have a Kensington Expert Mouse and I use buttons 3 and 4 for some actions.
Actually, the built-in keyboard shortcuts for moving spaces with Mission Control have the same problem, so I have configured Hammerspoon to turn the mouse clicks into key presses. I suppose I could do the same thing with Rectangle, tho it's annoying to have to rely on multiple apps.