Subscribe to CT logs for your domain, and you will know if this ever happens, from LE or from any oher authority. Such attack is a very big deal, if this happens this will only happen once, whichever hole is used will be closed. And if this does not happen, you can be rest assured your TLS is safe.
Meanwhile if DNSSEC's vision is ever fully realized, you will lose that control entirely. There is no CT there, and even if it was build somehow it will be useless as it has no "teeth".