> in Excel's case that question "Do you really want to quit? You have copied large amounts of data to the clipboard." even occurs when you have a single cell's worth in the clipboard
That's not correct. You need to have quite a few cells in the clipboard for this to happen.
> But that's also a confirmation question that no one really understands
The dialog tells you exactly what it is asking for. It gives you three options: keep the app open, store the data in the clipboard, discard the data from the clipboard. I am not sure how a user could not understand what to do in that situation.