With R2 you can also use a bucket or few buckets per tenant whereas with S3 that's not possible (even if you have a fat ENT contract with them from what I've heard). We've extended the S3 spec to make it possible to list more than 1000 buckets [1]. Currently we still ask that if you need more than 1k buckets that you open a customer support request for us to discuss your use-case.
[1] https://developers.cloudflare.com/r2/data-access/s3-api/exte...
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