I think there are (at least) two things on this topic. The majority opinion didn't agree with Thomas (no one signed on to it). Second, event under Thomas' opinion, the question becomes one of shaky Constitutional footing. If these "rights" are not really Constitutional, the issue needs to move to Congress. There is nothing that prevents Congress from crafting a law to explicitly allow anything you listed.
Also, it could be that better argumentation is needed to seat something as a right. Take gay marriage as an example. If we solely describe it as a contract (not a religious rite), then you can probably lay access to gay marriage within the Commerce clause. Married couples move around. We can't have their marriages suddenly annulled by moving within the US. We don't allow that to happen to other contracts. Yes it might require a destination wedding, but the couple will comeback with all the rights an privileges thereof.
