This is a really surprising comment to me. I also do many wire transfers and EFTs (used to run an investment company, so on the order of 200 incoming/outgoing EFTs and 4-5 wires per month) and have no idea what you are talking about. The only times I've had issues is either (1) when the banking information was entered incorrectly, either by a client or by my staff; (2) if it's a weird kind of trust account that doesn't accept direct wires and needs to go through an intermediary account, which is really rare.
I would really like to know what activity you are doing that is causing you so many payment processing issues.
Unless you are talking about LVTS which AFAIK is only used for inter-bank transfers? I have no experience with that system.