> Money is a separate system that often but not always flows hand in hand with the flow of energy and resources.
It is an exception when money doesn't flow hand in hand with energy and/or resources not a rule as you are implying
> Not every organisation.
You are moving the goalpost here. Your claim wasn't that few organizations don't run on energy and resources. Your claim was that no organization runs on energy and resources.
> Remove money from the stock market and you have barely anything left. Large portion of money circulates in organisations that have very little to do with energy or resources.
Stock market is an organization which has everything to do with energy and resources. Money is just used as an abstraction of those. Remove energy and resources of companies whose stock is being traded and you have nothing left.
Considering that your claim was that human organizations run on money and not on energy and resources I'm sure you won't have a problem naming a few of those organization. Just pleas don't name those where money is just an abstraction of energy/resources because those organization do actually run on energy and resources.