Well, just intonation generally sounds better to humans. A person playing violin would tend to naturally migrate to JI voicings of intervals whether they're consciously doing it or not. So, a tool that tells you whether you're "in tune" or not should ideally not tell someone they're out-of-tune when if they play in perfect JI.
On the other hand, if the goal is to just be in the general ballpark and accuracy of +/- 15 cents or so is just rounding error, then ET is probably fine. (My own violin skills are pretty rudimentary, so ET would be good enough. But if I were better I'd probably want a JI tuner.)