London and the South East are some of the densest populated areas in the UK, and one could expect exponential growth of infections there while other less populated areas could manage to keep their Rt around or bellow zero. If this strain was more prevalent in these regions, you would also see it taking a larger share of the infections nationwide.
However, the precautionary principle has been the keystone of good handling in the pandemic, so they are right to apply precautionary measures before it's too late. We will learn more about this strain in the next few weeks.