Of course it can be that I need to sit with it more, work with it more, connect more basic subjects to my intuition first to make it work. It can also be that if everyone waited for things to make intuitive sense we will fall back in science. Math is a great tool where it can take you places even when you don't possess the correct intuition if you just follow the rules.
But I have decided to try the intuition way nonetheless. My main problem is that, it was not immediately obvious to me that subtracting coprimes successively will always result in 1. It is still so strange to me. In comparison the fundamental theory of arithmetic is also strange but there is a good intuition behind it: any non prime number is a product of primes, because if it wasn't it would be prime itself!