Of course it does. Apple makes a huge amount of money from native apps. Apple also prevents web apps from competing with those native apps by restricting the capabilities in its browser and by not allowing anyone else to offer an alternative browser with more functionality.
Apple makes an absolutely exorbitant amount of money from this, mostly from Google because Safari on iOS is essentially the only browser that matters on the platform and Google is willing to pay through the nose to get themselves in that prime spot. (We'll see if that amount lessens with iOS 14.)