That true, but also consider that the especially idiotic "register_globals" has been disabled in PHP for many years. If people are still enabling that manually, it is solely because they use very outdated scripts which depend on this. Then, however, the real problem is relying on those crappy old scripts, and not the usage of PHP itself.
On the other hand, there's still other stupid stuff like "magic_quotes_gpc" that has only recently been deprecated.