According to the EPA, 27% of total greenhouse gas emissions come from transportation, with only 2% of transportation emissions coming from boats.
https://www.epa.gov/greenvehicles/fast-facts-transportation-...However, I also recall reading that boats produce a ton of emissions (I'm pretty sure it was a popular reddit post about how the huge oil tankers and shipping containers account for almost all ship-related emissions). One explanation: the maritime emissions may be underestimated due to the practice of ships using flags of convince. This website, and wikipedia and a few other sources, claim that the global contribution of maritime transportation to GHG/CO2 emissions is around 2% http://www.airclim.org/acidnews/new-figures-global-ship-emis...
2% of the total is still nothing to sneeze at, though. Since tankers and container ships are so big, it's likely that individual ships are some of the largest individual contributors to emissions. Maybe we should allow/subsidize these ships to use nuclear energy