ADAM: Genomics on Spark, Avocado Germline Variant Caller, and DECA CNV Caller (opens in new tab)

(bdgenomics.org)

27 pointsheuermh8y ago3 comments

3 comments

3 comments · 1 top-level

inciampati8y ago· 2 in thread

I'm curious how these pipelines fared on the NIST PrecisionFDA challenge.

heuermhOP8y ago

Do you have a link? We have not participated in such a challenge.

heuermhOP8y ago

PrecisionFDA Consistency Challenge https://precision.fda.gov/challenges/consistency

PrecisionFDA Truth Challenge https://precision.fda.gov/challenges/truth/results

The challenges themselves are closed, but perhaps we can ask for access to the challenge data and evaluation criteria to produce unofficial responses.

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