This doesn't affect branches, only indirect jumps (and calls). The performance impact will still be considerable. It will make PGO more crucial (or smarter JITting, for VM languages) since the penalty can be avoided by prefixing an indirect call with a direct call to the most likely target - this is a well-known technique, useful on machines with weaker jump predictors than branch predictors.
Quite possibly, the worst affected code will be OO code that is dynamically (open) polymorphic.