I don't see anyone repeating this fallacy w/regards to email.
The only difference between email and federated IM is email started out (mostly) federated and IM systems started out (mostly) not.
Only inertia is what drives this skepticism of federation in IM.
Just as there is no technical reason GateKeeper couldn't succeed on iOS just as it does on macOS, there is no technical reason federation couldn't succeed in IM as it does with email.
Just perceptions have to change.