If you respond to this situation by any action (other than smiling and walking away or joining in the accosting), you are demonstrating intolerance for the accoster. Even simply trying to reason with him/her about his/her beliefs demonstrates some level of intolerance. But you feel sympathy for the accosted, you don't share the views of the accoster, and you want to help in some way. This is known as the paradox of intolerance and it's a challenging philosophical issue.
The argument against Shopify that is being made here is that the behavior and actions of Breitbart and similar groups and publications bring about an atmosphere that leads to intolerance towards minorities. Or, if you prefer something more concrete, a store in Indiana refusing to sell a wedding cake to a gay couple demonstrates intolerance towards homosexuals. What can we do to help or make them stop being intolerant? How can we respond to this intolerance without demonstrating intolerance ourselves? Or is intolerance of intolerance a moral obligation?