As far as Intel based phones, that's even easier, tell developers they are realeasing an x86 based phone in the next year, either you bundle an x86 version - again you're already testing an x86 build every time you run the emulator - or you'll lose compatibility. Apple has never been afraid to abandon apps when it transistioned processors.
The Android situation is different, if people have a choice between buying an Android device that is 70 percent compatible and one that is 100% compatible. The one that is 70 percent compatible is at a disadvantage. But if people want an iOS device and Apple switches to Intel and they lose some apps what choice do they have?