As far as I know Facebook does the same thing. I haven't read the Facebook advertising documentation in a long time but know that they outline many of their metrics in detail. People haven't been getting overcharged and it hasn't effected billing. From the article: "... it did not impact billing, and we have notified our partners both through our product dashboards and via sales and publisher outreach. We also renamed the metric to make it clearer what we measure. This metric is one of many our partners use to assess their video campaigns."
What are the implications of this? "Due to the miscalculated data, marketers may have misjudged the performance of video advertising they have purchased from Facebook over the past two years."
The other part about making it difficult to compare against competitors is true regardless of having the same metric due to site and user differences. Maybe facebook users spend more on average than twitter users after clicking on your ad for an ecommerce site? A/B tests towards the goal you're interested in is much more fruitful from a business perspective then say comparing click thru rates.