No, we just have different notions of system state. If we have a pair of, say, Turing machine heads on one tape that aren't necessarily moving in lockstep, I say that the system state is the tape contents, the two heads' locations, and the two heads' states. A transition for this system can be either or both heads moving either direction, overwriting the symbol they're pointing at, and changing its own internal state. The state {tape="000111000", head0loc=0, head0state=2, head1loc=4, head1state=6} might transition to {tape="000101000", head0loc=0, head0state=2, head1loc=5, head1state=2}, or it might transition to {tape="100111000", head0loc=1, head0state=2, head1loc=4, head1state=6}, or to {tape="100101000", head0loc=1, head0state=2, head1loc=5, head1state=2}. In a given run of the system,
one of those is what actually happens. Then another happens after that, and so on. So we get a sequence of them.
A transition is not one machine head changing its position and state. {head0loc=0, head0state=2}->{head0loc=1, head0state=2} is not a transition because that does not identify a pair of whole-system states.