As of iOS 8 that's no longer the case. JSC JIT compilation can be used in native apps. (It's also used by WKWebView.)
http://trac.webkit.org/wiki/JavaScriptCore
"JavaScriptCore is an optimizing virtual machine. JavaScriptCore consists of the following building blocks: lexer, parser, start-up interpreter (LLInt), baseline JIT, a low-latency optimizing JIT (DFG), and a high-throughput optimizing JIT (FTL)."