No, the point of this tool is that some browsers require a polyfill, and some don't because the feature is natively supported. A transpiler like Babel cannot possibly determine that, so it has to be safe and include polyfills for all features used in the code it's transpiling, reglardless of whether or not the browser you're using already supports the feature.

A good example of this is Promises, which are supported in many modern browsers, but not all.